#VCF VIEWER FOR MAC OS MAC OS X#
The latest versions of Mac OS X come with Python 2.7 out of the box.ĬFLAGS=-I/opt/local/include/db53 LDFLAGS=-L/opt/local/lib/db53/ python setup.py buildīrowseVCF used as web application is composed of four steps: Stripped-down Python v2.7 compiled on OSX, along with pre-compiled wormtableĪnd BerkeleyDB modules.
In a path that does not contain spaces, and run launcher-osx.sh from a
tar.gz file on the release page, unzip it Sudo apt-get install python-dev (Ubuntu/Debian) or yum install python-develĭownload BrowseVCF (substitute X.X with latest version)ĭownload the OSX-specific. Sudo apt-get install libdb-dev (Ubuntu/Debian) or yum install libdb-devel If it's not installed, download Python from. The latest versions of CentOS, Fedora, Redhat and Ubuntu come with Tested on Ubuntu version 14.04.Īlternatively, to compile from source, please follow the instructions below. Stripped-down Python v2.7 compiled on GNU/Linux, along with pre-compiled In a path that does not contain spaces, and run launcher-gnu.sh from a For GNU Linux usersĭownload the GNU/Linux-specific. Launcher-windows.bat in the web directory. Unzip it in a path that does not contain spaces, and double-click on For Windows usersĭownload the zip file ( browseVCF_win7_vX.X.zip) from the release page, Of an annotated whole-genome sample (~500Mb when compressed) can take ~10Gb. Table of Contentsīefore proceeding with the installation, please make sure you have enoughĭisk space! For example, the files generated by BrowseVCF during the analysis We may someday try to update the code and fix the known bugs (no promises though!), but you're very welcome to submit patches and pull requests to fix outstanding issues. If you encounter any problems, please check among the known (closed) issues section. While we're happy BrowseVCF has proven helpful to many users, we unfortunately no longer have time to maintain it and to keep it up to date with changing VCF format specifications. July 2020 update: BrowseVCF is not officially supported BrowseVCF is a web-based application and workflow to quickly prioritise
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